Variant report

Variant	rs36025358
Chromosome Location	chr4:148927079-148927080
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10021480	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10029825	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10519933	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1317354	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13435037	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17024251	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28493775	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28552498	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28754881	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4364238	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55912417	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56657155	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58201461	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6535571	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6535572	0.97[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6811259	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6849257	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6856135	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73854000	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs869762	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs869763	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9990586	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9996477	0.97[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017904	chr4:148814133-148975348	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148866400-148927400	Weak transcription	Thymus	Thymus
2	chr4:148885600-148939000	Weak transcription	Pancreas	Pancrea
3	chr4:148889200-148936200	Weak transcription	Fetal Intestine Large	intestine
4	chr4:148891600-148928000	Weak transcription	A549	lung
5	chr4:148896600-148928400	Weak transcription	Spleen	Spleen
6	chr4:148906400-148928400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:148907200-148928000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:148907400-148928400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr4:148910200-148928400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr4:148911600-148936200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr4:148913200-148929200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr4:148913600-148933200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr4:148915200-148928200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:148916400-148928200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr4:148916600-148928800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr4:148916800-148927800	Weak transcription	HUVEC	blood vessel
17	chr4:148917800-148927200	Weak transcription	Lung	lung
18	chr4:148918000-148928000	Weak transcription	Colon Smooth Muscle	Colon
19	chr4:148918000-148968000	Weak transcription	Gastric	stomach
20	chr4:148918200-148929200	Weak transcription	Ovary	ovary
21	chr4:148918200-148937000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr4:148918800-148928400	Weak transcription	HSMM	muscle
23	chr4:148921000-148928200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr4:148921000-148928400	Weak transcription	Fetal Muscle Leg	muscle
25	chr4:148921000-148928400	Weak transcription	NHEK	skin
26	chr4:148921000-148929000	Weak transcription	Aorta	Aorta
27	chr4:148921000-148930600	Weak transcription	Fetal Intestine Small	intestine
28	chr4:148921000-148930800	Weak transcription	GM12878-XiMat	blood
29	chr4:148921000-148945000	Weak transcription	Esophagus	oesophagus
30	chr4:148921200-148928400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr4:148921200-148928400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr4:148921200-148932400	Weak transcription	Fetal Stomach	stomach
33	chr4:148921400-148927400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr4:148925000-148928200	Weak transcription	HMEC	breast
35	chr4:148925000-148929800	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr4:148925200-148927200	Weak transcription	Right Ventricle	heart
37	chr4:148925200-148927800	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr4:148926000-148927200	Weak transcription	Left Ventricle	heart
39	chr4:148926000-148927800	Weak transcription	Hela-S3	cervix
40	chr4:148926000-148928400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr4:148926200-148928400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr4:148926200-148928600	Weak transcription	Primary hematopoietic stem cells	blood
43	chr4:148926400-148927600	Enhancers	Fetal Muscle Trunk	muscle
44	chr4:148926400-148927800	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr4:148926400-148928000	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr4:148926400-148928200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr4:148926400-148928200	Weak transcription	Osteobl	bone
48	chr4:148926400-148928400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr4:148926400-148928400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr4:148926400-148928400	Weak transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links