Variant report

Variant	rs13435212
Chromosome Location	chr4:118839903-118839904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10005201	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10006591	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10017835	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10024875	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10461154	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11098415	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11737403	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11933013	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11936756	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12108300	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12507486	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12641736	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13103068	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13111689	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13113414	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13113939	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13127849	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17636128	0.82[ASN][1000 genomes]
rs1872770	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2389467	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2389471	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2389474	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2389476	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28418479	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28419375	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28558955	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28571975	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28674471	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28861194	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2892782	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4314350	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4481290	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4487434	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4505893	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4543205	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4560487	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4590118	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4834652	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6534064	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6534071	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67213843	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6810448	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6813418	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6823720	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6824077	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6824944	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6831649	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6832316	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6838122	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6838310	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6841411	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6847160	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6848399	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6856081	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6857576	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72667473	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7657155	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7673016	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7676706	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7680858	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7684262	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs936891	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9799400	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9884363	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9991018	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482390	chr4:118804378-118944823	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
2	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv3353257	chr4:118839204-118841202	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118839200-118840200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:118839400-118842200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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