Variant report

Variant	rs28571975
Chromosome Location	chr4:118822456-118822457
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:118820589..118823365-chr4:118825346..118827075,2	MCF-7	breast:
2	chr4:118817633..118820378-chr4:118820804..118823749,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10005201	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10006591	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10017835	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10024875	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10461154	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098415	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11737403	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11933013	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11936756	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12108300	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12507486	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12641736	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13103068	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13111689	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13113414	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13113939	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13127849	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13435212	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17636128	0.81[ASN][1000 genomes]
rs1872770	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2389467	0.88[EUR][1000 genomes]
rs2389471	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2389474	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2389476	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28418479	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28419375	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28558955	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28674471	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28861194	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2892782	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4314350	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4481290	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4487434	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4505893	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4543205	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4560487	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4590118	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4834652	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6534064	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6534071	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67213843	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6810448	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6813418	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6823720	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6824077	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6824944	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6831649	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6832316	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6838122	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6838310	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6841411	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6847160	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6848399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6856081	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6857576	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72667473	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7657155	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7673016	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7676706	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7680858	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7684262	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs936891	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9799400	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9884363	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9991018	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482390	chr4:118804378-118944823	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118821200-118822800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:118821200-118823000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:118821200-118823800	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr4:118821200-118824400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:118821400-118823000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr4:118821400-118823000	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr4:118821400-118823200	Enhancers	Stomach Mucosa	stomach
8	chr4:118821600-118822800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr4:118821600-118822800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr4:118821600-118822800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr4:118821600-118823000	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr4:118821600-118824200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr4:118821800-118822600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:118821800-118822800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr4:118821800-118822800	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr4:118822200-118822600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr4:118822400-118822800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr4:118822400-118823200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr4:118822400-118823800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr4:118822400-118824000	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links