Variant report

Variant	rs13435482
Chromosome Location	chr4:8310680-8310681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:8306129..8312354-chr4:8314662..8318399,6	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10023502	0.86[ASN][1000 genomes]
rs10029934	0.85[ASN][1000 genomes]
rs28664747	0.92[ASN][1000 genomes]
rs28668483	0.89[ASN][1000 genomes]
rs4235260	0.85[ASN][1000 genomes]
rs4235261	0.85[ASN][1000 genomes]
rs4235262	0.85[ASN][1000 genomes]
rs4235264	0.81[ASN][1000 genomes]
rs4286505	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4498118	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4588439	0.91[ASN][1000 genomes]
rs4629434	0.90[ASN][1000 genomes]
rs4696679	0.86[ASN][1000 genomes]
rs4696680	0.85[ASN][1000 genomes]
rs4696682	0.85[ASN][1000 genomes]
rs4696684	0.82[ASN][1000 genomes]
rs4696806	0.85[ASN][1000 genomes]
rs62286507	0.89[ASN][1000 genomes]
rs62286509	0.83[ASN][1000 genomes]
rs62286511	0.86[ASN][1000 genomes]
rs6818156	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002794	chr4:8110083-8490934	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv878595	chr4:8154534-8390646	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv829853	chr4:8172065-8320868	Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv593627	chr4:8202211-8311043	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv878600	chr4:8209447-8312158	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv878601	chr4:8214767-8440951	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv878602	chr4:8214767-8448992	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
8	nsv1009011	chr4:8225669-8424831	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv461218	chr4:8254784-8320126	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases
10	nsv593628	chr4:8254784-8320126	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases
11	nsv878603	chr4:8289807-8312158	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8279000-8317200	Weak transcription	Gastric	stomach
2	chr4:8306000-8311200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:8306000-8311800	Enhancers	Adipose Nuclei	Adipose
4	chr4:8306400-8314000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:8307600-8312400	Enhancers	Right Ventricle	heart
6	chr4:8308200-8313000	Enhancers	Ovary	ovary
7	chr4:8308600-8311400	Weak transcription	Esophagus	oesophagus
8	chr4:8308800-8310800	Weak transcription	Left Ventricle	heart
9	chr4:8309000-8311600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr4:8309200-8311000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr4:8309200-8311200	Weak transcription	HSMMtube	muscle
12	chr4:8309400-8311000	Weak transcription	Spleen	Spleen
13	chr4:8309400-8311600	Weak transcription	Colon Smooth Muscle	Colon
14	chr4:8309600-8310800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr4:8309600-8311200	Weak transcription	Psoas Muscle	Psoas
16	chr4:8309800-8311000	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr4:8310000-8311000	Enhancers	K562	blood
18	chr4:8310000-8311600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:8310200-8311000	Enhancers	Stomach Smooth Muscle	stomach
20	chr4:8310400-8311600	Enhancers	Right Atrium	heart
21	chr4:8310600-8311000	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr4:8310600-8311200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr4:8310600-8311200	Enhancers	Fetal Lung	lung
24	chr4:8310600-8311400	Bivalent Enhancer	Placenta	Placenta
25	chr4:8310600-8311600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr4:8310600-8311600	Enhancers	Rectal Smooth Muscle	rectum
27	chr4:8310600-8311600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
28	chr4:8310600-8312000	Enhancers	Fetal Heart	heart
29	chr4:8310600-8312400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
30	chr4:8310600-8312400	Enhancers	Fetal Stomach	stomach
31	chr4:8310600-8312600	Enhancers	Fetal Muscle Leg	muscle

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