Variant report

Variant	rs4629434
Chromosome Location	chr4:8312324-8312325
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:8312041..8314245-chr4:8317234..8319161,2	K562	blood:
2	chr4:8306129..8312354-chr4:8314662..8318399,6	MCF-7	breast:
3	chr4:8303617..8305448-chr4:8311831..8313564,2	MCF-7	breast:
4	chr4:8311363..8313807-chr4:8315101..8317109,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10023502	0.94[ASN][1000 genomes]
rs10029934	0.92[ASN][1000 genomes]
rs13435482	0.90[ASN][1000 genomes]
rs28664747	0.85[ASN][1000 genomes]
rs28668483	0.83[ASN][1000 genomes]
rs4235260	0.92[ASN][1000 genomes]
rs4235261	0.92[ASN][1000 genomes]
rs4235262	0.92[ASN][1000 genomes]
rs4235264	0.89[ASN][1000 genomes]
rs4286505	0.86[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4498118	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4588439	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4696679	0.94[ASN][1000 genomes]
rs4696680	0.92[ASN][1000 genomes]
rs4696682	0.92[ASN][1000 genomes]
rs4696684	0.92[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs4696806	0.92[ASN][1000 genomes]
rs62286507	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs62286509	0.93[ASN][1000 genomes]
rs62286511	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6447860	0.82[CHB][hapmap]
rs6818156	0.88[AFR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002794	chr4:8110083-8490934	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv878595	chr4:8154534-8390646	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv829853	chr4:8172065-8320868	Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv878601	chr4:8214767-8440951	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv878602	chr4:8214767-8448992	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv1009011	chr4:8225669-8424831	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv461218	chr4:8254784-8320126	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases
8	nsv593628	chr4:8254784-8320126	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8279000-8317200	Weak transcription	Gastric	stomach
2	chr4:8306400-8314000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:8307600-8312400	Enhancers	Right Ventricle	heart
4	chr4:8308200-8313000	Enhancers	Ovary	ovary
5	chr4:8310600-8312400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr4:8310600-8312400	Enhancers	Fetal Stomach	stomach
7	chr4:8310600-8312600	Enhancers	Fetal Muscle Leg	muscle
8	chr4:8311000-8312400	Weak transcription	K562	blood
9	chr4:8311400-8312600	Enhancers	Esophagus	oesophagus
10	chr4:8311400-8314000	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr4:8311400-8316800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr4:8311600-8312400	Enhancers	Stomach Smooth Muscle	stomach
13	chr4:8311600-8317200	Weak transcription	Right Atrium	heart
14	chr4:8311800-8316800	Weak transcription	Left Ventricle	heart
15	chr4:8311800-8320800	Weak transcription	Psoas Muscle	Psoas
16	chr4:8312000-8316600	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links