Variant report

Variant	rs13435968
Chromosome Location	chr5:167245587-167245588
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EBF1	chr5:167245487-167245724	GM12878	blood:	n/a	chr5:167245655-167245664 chr5:167245655-167245664 chr5:167245653-167245666

Variant related genes	Relation type
TENM2	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13361383	0.97[AFR][1000 genomes]
rs7737681	0.89[YRI][hapmap];0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167238400-167246600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr5:167240000-167250600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:167240600-167246000	Weak transcription	Fetal Thymus	thymus
4	chr5:167241000-167246000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:167242600-167246600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:167242600-167247400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:167243600-167247600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:167243800-167246400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:167244000-167246000	Enhancers	NHEK	skin
10	chr5:167244000-167246400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:167244000-167246600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:167244000-167247000	Weak transcription	HSMMtube	muscle
13	chr5:167244000-167247200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr5:167244200-167246800	Weak transcription	Fetal Lung	lung
15	chr5:167244200-167247200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:167244200-167247200	Weak transcription	HSMM	muscle
17	chr5:167245000-167246200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr5:167245000-167247800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr5:167245000-167247800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr5:167245200-167246200	Weak transcription	HMEC	breast
21	chr5:167245200-167247800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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