Variant report

Variant	rs7737681
Chromosome Location	chr5:167244760-167244761
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10036294	0.94[ASN][1000 genomes]
rs10045595	0.82[JPT][hapmap]
rs10065043	0.87[CHB][hapmap]
rs10454965	0.85[EUR][1000 genomes]
rs10462970	1.00[CHB][hapmap];0.98[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11134468	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];0.81[MEX][hapmap];0.93[EUR][1000 genomes]
rs11134470	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11134471	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];0.81[MEX][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11949355	0.90[EUR][1000 genomes]
rs11956673	0.93[EUR][1000 genomes]
rs12186530	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12516791	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[EUR][1000 genomes]
rs12520082	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];0.81[MEX][hapmap];0.93[EUR][1000 genomes]
rs13361383	0.94[AFR][1000 genomes]
rs13435968	0.89[YRI][hapmap];0.91[AFR][1000 genomes]
rs1364370	1.00[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs17069129	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[EUR][1000 genomes]
rs2337000	0.91[CHB][hapmap];0.83[CHD][hapmap]
rs4479863	0.91[CHB][hapmap];0.83[CHD][hapmap]
rs4868807	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4869068	0.93[EUR][1000 genomes]
rs4869072	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57533222	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57674698	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58347375	0.93[EUR][1000 genomes]
rs58922769	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6555769	0.91[ASN][1000 genomes]
rs6861976	0.95[ASN][1000 genomes]
rs6862936	0.87[CHB][hapmap]
rs6891311	0.91[CHB][hapmap];0.81[CHD][hapmap]
rs6895940	0.91[CHB][hapmap]
rs6898153	0.84[EUR][1000 genomes]
rs72832005	0.90[EUR][1000 genomes]
rs72832012	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72832022	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7703715	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7707689	0.82[JPT][hapmap]
rs7708656	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7714651	0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs7730435	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167238400-167246600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr5:167240000-167250600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:167240600-167246000	Weak transcription	Fetal Thymus	thymus
4	chr5:167241000-167246000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:167242000-167245000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr5:167242000-167245000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:167242600-167246600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:167242600-167247400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:167243400-167244800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr5:167243600-167245000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr5:167243600-167247600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:167243800-167246400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr5:167244000-167244800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr5:167244000-167245200	Enhancers	HMEC	breast
15	chr5:167244000-167246000	Enhancers	NHEK	skin
16	chr5:167244000-167246400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr5:167244000-167246600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr5:167244000-167247000	Weak transcription	HSMMtube	muscle
19	chr5:167244000-167247200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr5:167244200-167246800	Weak transcription	Fetal Lung	lung
21	chr5:167244200-167247200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr5:167244200-167247200	Weak transcription	HSMM	muscle
23	chr5:167244600-167244800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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