Variant report

Variant	rs11134470
Chromosome Location	chr5:167212861-167212862
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10036294	0.85[ASN][1000 genomes]
rs10462970	0.92[ASN][1000 genomes]
rs11134468	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11134471	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11949355	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11956673	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12186530	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12516791	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12520082	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1364370	0.85[ASN][1000 genomes]
rs17069129	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4868807	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4869068	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4869072	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57533222	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57674698	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58347375	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58922769	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6555769	0.86[ASN][1000 genomes]
rs6861976	0.90[ASN][1000 genomes]
rs72832005	0.83[EUR][1000 genomes]
rs72832012	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72832022	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7703715	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7708656	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7730435	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7737681	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167203600-167218800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167209400-167214600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:167210800-167217200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:167210800-167225000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:167211000-167214600	Weak transcription	Fetal Muscle Leg	muscle
6	chr5:167211200-167219200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr5:167211400-167213800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr5:167211800-167214600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:167212200-167213200	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr5:167212400-167214800	Enhancers	Osteobl	bone
11	chr5:167212600-167215200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:167212600-167217600	Weak transcription	HSMM	muscle
13	chr5:167212600-167219000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr5:167212800-167215000	Enhancers	NHDF-Ad	bronchial
15	chr5:167212800-167218800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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