Variant report

Variant	rs58922769
Chromosome Location	chr5:167208098-167208099
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10036294	0.86[ASN][1000 genomes]
rs10462970	0.93[ASN][1000 genomes]
rs11134468	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11134470	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11134471	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11949355	0.83[EUR][1000 genomes]
rs11956673	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12186530	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12516791	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12520082	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1364370	0.86[ASN][1000 genomes]
rs17069129	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4868807	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4869068	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4869072	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57533222	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57674698	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58347375	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6555769	0.88[ASN][1000 genomes]
rs6861976	0.92[ASN][1000 genomes]
rs72832005	0.83[EUR][1000 genomes]
rs72832012	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72832022	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7703715	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7708656	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7730435	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7737681	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1032559	chr5:167070888-167210684	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167203600-167218800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167205400-167209400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:167205400-167212200	Weak transcription	HSMM	muscle
4	chr5:167205600-167210200	Weak transcription	HMEC	breast
5	chr5:167207600-167210400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:167207600-167210400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:167207800-167209800	Weak transcription	Fetal Lung	lung
8	chr5:167208000-167208400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood

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