Variant report

Variant	rs72832012
Chromosome Location	chr5:167197420-167197421
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10454965	0.81[EUR][1000 genomes]
rs10462970	0.86[ASN][1000 genomes]
rs10475861	0.82[ASN][1000 genomes]
rs11134468	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11134470	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11134471	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11949355	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11956673	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12186530	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12516791	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12520082	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1364370	0.96[ASN][1000 genomes]
rs17069129	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2337000	0.83[ASN][1000 genomes]
rs4479863	0.83[ASN][1000 genomes]
rs4868807	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4869068	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4869072	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57533222	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57674698	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58347375	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58922769	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61165988	0.81[ASN][1000 genomes]
rs6555769	0.81[ASN][1000 genomes]
rs6861976	0.84[ASN][1000 genomes]
rs6891311	0.82[ASN][1000 genomes]
rs6898153	0.80[EUR][1000 genomes]
rs72832005	0.86[EUR][1000 genomes]
rs72832022	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7703715	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7708656	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7730435	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7737681	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1032559	chr5:167070888-167210684	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167192800-167199400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:167193000-167204400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:167197000-167198000	Enhancers	HSMM	muscle
4	chr5:167197000-167198800	Enhancers	Osteobl	bone
5	chr5:167197200-167197600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:167197200-167197600	Enhancers	HSMMtube	muscle
7	chr5:167197200-167197800	Enhancers	NH-A	brain
8	chr5:167197200-167198000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr5:167197200-167198000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr5:167197200-167198000	Enhancers	HMEC	breast
11	chr5:167197200-167199000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr5:167197400-167197600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:167197400-167197600	Flanking Active TSS	NHDF-Ad	bronchial
14	chr5:167197400-167199200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr5:167197400-167199800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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