Variant report

Variant	rs1364370
Chromosome Location	chr5:167196549-167196550
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10036294	0.80[ASN][1000 genomes]
rs10045430	0.81[JPT][hapmap]
rs10065043	0.95[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10070839	0.87[EUR][1000 genomes]
rs10462970	1.00[CHB][hapmap];0.85[CHD][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs10475861	0.83[ASN][1000 genomes]
rs11134468	0.91[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs11134470	0.85[ASN][1000 genomes]
rs11134471	0.95[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs12186530	0.85[ASN][1000 genomes]
rs12516791	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs12520082	0.91[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap]
rs12520148	0.82[JPT][hapmap]
rs1364369	0.86[TSI][hapmap];0.87[EUR][1000 genomes]
rs17069129	0.91[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2337000	0.91[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs2337017	0.82[JPT][hapmap]
rs279402	0.82[JPT][hapmap]
rs4479863	0.91[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs4628015	0.82[JPT][hapmap]
rs4868807	0.95[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs4869072	0.84[ASN][1000 genomes]
rs57533222	0.86[ASN][1000 genomes]
rs57674698	0.83[ASN][1000 genomes]
rs58922769	0.86[ASN][1000 genomes]
rs61165988	0.80[ASN][1000 genomes]
rs6555769	0.81[ASN][1000 genomes]
rs67767662	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6861976	0.88[ASN][1000 genomes]
rs6862936	0.87[CHB][hapmap];0.81[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap]
rs6869167	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6880746	0.81[CEU][hapmap];0.89[EUR][1000 genomes]
rs6891311	0.91[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs6895940	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs72832012	0.96[ASN][1000 genomes]
rs72832022	0.86[ASN][1000 genomes]
rs7703715	0.86[ASN][1000 genomes]
rs7707689	0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs7708656	0.86[ASN][1000 genomes]
rs7730435	0.95[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs7737681	1.00[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1032559	chr5:167070888-167210684	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167183400-167197200	Weak transcription	HSMMtube	muscle
2	chr5:167186800-167197200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:167191600-167197400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:167192800-167197000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:167192800-167199400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:167193000-167196800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr5:167193000-167204400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:167195200-167197000	Weak transcription	HSMM	muscle
9	chr5:167195200-167197000	Weak transcription	Osteobl	bone
10	chr5:167195200-167197200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:167195400-167196800	Weak transcription	NHDF-Ad	bronchial
12	chr5:167196000-167197200	Weak transcription	HMEC	breast

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