Variant report

Variant	rs6891311
Chromosome Location	chr5:167173160-167173161
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10045430	0.90[JPT][hapmap]
rs10045595	0.83[CEU][hapmap];0.87[TSI][hapmap]
rs10065043	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10454960	0.83[CEU][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap]
rs10462970	0.91[CHB][hapmap]
rs10516038	0.90[TSI][hapmap];0.86[EUR][1000 genomes]
rs11134468	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11134471	0.86[CHB][hapmap];0.81[CHD][hapmap]
rs11738000	0.87[TSI][hapmap]
rs11750131	0.90[TSI][hapmap];0.87[EUR][1000 genomes]
rs11949355	0.94[ASN][1000 genomes]
rs11956673	0.97[ASN][1000 genomes]
rs12516791	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12520082	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12520148	0.91[JPT][hapmap]
rs12651802	0.86[EUR][1000 genomes]
rs12657288	0.87[EUR][1000 genomes]
rs13436455	0.83[CEU][hapmap];0.95[EUR][1000 genomes]
rs1364368	0.87[TSI][hapmap]
rs1364370	0.91[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs17069129	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1834118	0.84[EUR][1000 genomes]
rs2018599	0.87[EUR][1000 genomes]
rs2337000	0.91[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2337017	0.91[JPT][hapmap]
rs2337018	0.85[JPT][hapmap]
rs279402	0.91[JPT][hapmap]
rs2911499	0.87[TSI][hapmap]
rs2973664	0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs35366185	0.93[EUR][1000 genomes]
rs4479863	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4583906	0.93[EUR][1000 genomes]
rs4624810	0.82[CEU][hapmap];0.85[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4628015	0.91[JPT][hapmap]
rs4868807	0.86[CHB][hapmap]
rs4869067	0.89[JPT][hapmap]
rs4869068	0.92[ASN][1000 genomes]
rs58347375	0.96[ASN][1000 genomes]
rs61165988	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67767662	0.96[ASN][1000 genomes]
rs6861976	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6862936	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.88[MKK][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6863601	0.87[TSI][hapmap]
rs6869167	0.93[ASN][1000 genomes]
rs6879227	0.87[EUR][1000 genomes]
rs6895940	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6898153	0.85[JPT][hapmap]
rs72832012	0.82[ASN][1000 genomes]
rs7703401	0.82[CEU][hapmap];0.90[EUR][1000 genomes]
rs7717495	0.86[JPT][hapmap]
rs7730435	0.86[CHB][hapmap]
rs7737681	0.91[CHB][hapmap];0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1032559	chr5:167070888-167210684	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167170400-167177200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167171000-167181200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr5:167171600-167181800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:167171800-167177200	Weak transcription	HSMM	muscle
5	chr5:167171800-167180000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:167171800-167180000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:167172400-167180400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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