Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10516038	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11134472	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11738000	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11750131	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12651802	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12657288	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13166995	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13436455	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1364368	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2018599	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2911499	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2973664	0.80[AMR][1000 genomes]
rs2973667	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35366185	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4270713	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4479863	0.83[EUR][1000 genomes]
rs4583906	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4624810	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61165988	0.85[EUR][1000 genomes]
rs6862936	0.85[EUR][1000 genomes]
rs6863601	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6879227	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6891311	0.84[EUR][1000 genomes]
rs6898256	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7703401	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1032559	chr5:167070888-167210684	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167171000-167181200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr5:167171600-167181800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:167171800-167180000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:167171800-167180000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:167172400-167180400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:167178200-167181800	Weak transcription	HSMMtube	muscle
7	chr5:167178200-167182000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:167178400-167180800	Weak transcription	NHDF-Ad	bronchial
9	chr5:167178600-167182000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:167178600-167186200	Weak transcription	Osteobl	bone
11	chr5:167178800-167181400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:167178800-167181400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr5:167179000-167182000	Weak transcription	HSMM	muscle
14	chr5:167179200-167181200	Weak transcription	Fetal Kidney	kidney

Quick Search: