Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10045595	0.89[EUR][1000 genomes]
rs10454960	0.92[EUR][1000 genomes]
rs10516038	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs11738000	1.00[CEU][hapmap];0.82[CHB][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11750131	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs12651802	0.84[EUR][1000 genomes]
rs12657288	0.83[EUR][1000 genomes]
rs13166995	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13436455	0.88[CEU][hapmap]
rs1364368	0.96[CEU][hapmap];0.83[CHB][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1834118	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2018599	0.83[EUR][1000 genomes]
rs2911499	0.96[CEU][hapmap];0.83[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2973664	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs2973667	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4270713	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4624810	0.91[CEU][hapmap]
rs6861976	0.83[EUR][1000 genomes]
rs6863601	0.96[CEU][hapmap];0.83[CHB][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6879227	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs6898256	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7703401	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167248000-167258400	Weak transcription	Aorta	Aorta
2	chr5:167248400-167251400	Enhancers	Brain Germinal Matrix	brain
3	chr5:167248400-167255200	Weak transcription	Esophagus	oesophagus
4	chr5:167248600-167270000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:167250000-167253400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:167250200-167251000	Transcr. at gene 5' and 3'	NHEK	skin
7	chr5:167250200-167251800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:167250200-167253800	Weak transcription	HMEC	breast
9	chr5:167250600-167251400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:167250600-167252000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr5:167250600-167255200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:167250600-167255800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:167250800-167251800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr5:167250800-167255200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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