Variant report

Variant	rs11750131
Chromosome Location	chr5:167185908-167185909
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167185874..167188275-chr5:167189453..167191702,2	K562	blood:
2	chr5:167182573..167184424-chr5:167185880..167187597,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10045595	0.90[TSI][hapmap]
rs10070839	0.85[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs10454960	0.94[TSI][hapmap]
rs10454965	0.81[CHD][hapmap]
rs10516038	1.00[CEU][hapmap];0.90[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11134472	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs11738000	0.92[CEU][hapmap];0.90[LWK][hapmap];0.83[MEX][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12651802	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12657288	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13166995	0.85[EUR][1000 genomes]
rs13436455	0.96[CEU][hapmap];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1364368	0.88[CEU][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1364369	0.85[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs1834118	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2018599	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2336972	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2337000	0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs2911499	0.88[CEU][hapmap];0.81[GIH][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2973664	0.95[CEU][hapmap];0.81[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2973667	0.84[EUR][1000 genomes]
rs35366185	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4270713	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4479863	0.90[TSI][hapmap];0.86[EUR][1000 genomes]
rs4583906	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4624810	0.95[CEU][hapmap];0.84[CHB][hapmap];0.80[JPT][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61165988	0.88[EUR][1000 genomes]
rs6861976	0.87[EUR][1000 genomes]
rs6862936	0.82[CEU][hapmap];0.87[TSI][hapmap];0.88[EUR][1000 genomes]
rs6863601	0.88[CEU][hapmap];0.81[GIH][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes]
rs6879227	1.00[CEU][hapmap];0.89[CHB][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6880746	0.84[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs6891311	0.90[TSI][hapmap];0.87[EUR][1000 genomes]
rs6898256	0.82[EUR][1000 genomes]
rs7703401	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1032559	chr5:167070888-167210684	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167178600-167186200	Weak transcription	Osteobl	bone
2	chr5:167182200-167191800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:167182400-167190200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:167183200-167186600	Weak transcription	HSMM	muscle
5	chr5:167183400-167197200	Weak transcription	HSMMtube	muscle
6	chr5:167183600-167186200	Weak transcription	NHDF-Ad	bronchial
7	chr5:167183600-167190600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:167184000-167191800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:167185000-167186000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:167185000-167188000	Enhancers	HMEC	breast
11	chr5:167185000-167192800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr5:167185200-167186800	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr5:167185200-167187000	Enhancers	NH-A	brain
14	chr5:167185200-167188200	Enhancers	NHEK	skin
15	chr5:167185200-167193000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:167185400-167186000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:167185400-167186800	Enhancers	Placenta Amnion	Placenta Amnion
18	chr5:167185400-167186800	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr5:167185600-167186000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links