Variant report

Variant	rs1364368
Chromosome Location	chr5:167215490-167215491
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10045595	0.84[CEU][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes]
rs10454960	0.94[ASW][hapmap];0.84[CEU][hapmap];0.87[LWK][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];0.87[YRI][hapmap];0.90[EUR][1000 genomes]
rs10516038	0.88[CEU][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes]
rs11134472	0.96[CEU][hapmap];0.83[CHB][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11738000	0.96[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11750131	0.88[CEU][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12521018	0.84[JPT][hapmap]
rs12651802	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12657288	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13166995	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13436455	0.84[CEU][hapmap];0.82[JPT][hapmap]
rs1421989	0.84[JPT][hapmap]
rs1421990	0.89[JPT][hapmap]
rs1424290	0.88[AFR][1000 genomes]
rs1549152	0.84[JPT][hapmap]
rs1834118	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2018599	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2337000	0.94[TSI][hapmap];0.83[EUR][1000 genomes]
rs2911499	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2973664	0.91[CEU][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2973667	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4270713	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4479863	0.87[TSI][hapmap]
rs4583906	0.81[AMR][1000 genomes]
rs4624810	0.87[CEU][hapmap];0.83[JPT][hapmap]
rs6861976	0.84[EUR][1000 genomes]
rs6862936	0.84[TSI][hapmap]
rs6863601	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6879227	0.88[CEU][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6891311	0.87[TSI][hapmap]
rs6898256	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7703401	0.83[CEU][hapmap];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167203600-167218800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167210800-167217200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:167210800-167225000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:167211200-167219200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:167212600-167217600	Weak transcription	HSMM	muscle
6	chr5:167212600-167219000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr5:167212800-167218800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr5:167214600-167219800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr5:167214800-167216800	Weak transcription	Osteobl	bone
10	chr5:167214800-167217000	Weak transcription	Aorta	Aorta
11	chr5:167215200-167217000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:167215200-167219000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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