Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1035374	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12153261	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12519816	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12521018	1.00[CEU][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13436455	0.84[JPT][hapmap]
rs1364368	0.89[JPT][hapmap]
rs1421989	0.84[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs1549151	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1549152	1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2052466	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2911499	0.84[JPT][hapmap]
rs4624810	0.84[JPT][hapmap]
rs4869075	0.84[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs4869076	0.82[ASN][1000 genomes]
rs55698578	0.88[ASN][1000 genomes]
rs6859905	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6879227	0.84[JPT][hapmap]
rs72835612	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73388370	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7714210	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7714651	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167248000-167258400	Weak transcription	Aorta	Aorta
2	chr5:167248600-167270000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:167250600-167255800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:167251000-167256600	Genic enhancers	NHEK	skin
5	chr5:167251400-167262200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:167251800-167257000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:167251800-167299000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:167252600-167276000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr5:167253400-167255400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:167253800-167255600	Enhancers	HMEC	breast
11	chr5:167255000-167255400	Enhancers	Lung	lung
12	chr5:167255200-167255400	Enhancers	Esophagus	oesophagus
13	chr5:167255200-167255400	Enhancers	Fetal Lung	lung
14	chr5:167255200-167256200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:167255200-167256200	Enhancers	HSMMtube	muscle
16	chr5:167255200-167256400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:167255200-167262400	Weak transcription	HSMM	muscle

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