Variant report

Variant	rs55698578
Chromosome Location	chr5:167264726-167264727
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1035374	0.95[ASN][1000 genomes]
rs12153261	0.87[ASN][1000 genomes]
rs12519816	0.94[ASN][1000 genomes]
rs12521018	0.98[ASN][1000 genomes]
rs1421989	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1421990	0.88[ASN][1000 genomes]
rs1549151	0.95[ASN][1000 genomes]
rs1549152	0.94[ASN][1000 genomes]
rs2052466	0.88[ASN][1000 genomes]
rs4869075	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4869076	0.88[ASN][1000 genomes]
rs6859905	0.85[ASN][1000 genomes]
rs73388370	0.88[ASN][1000 genomes]
rs7714210	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167248600-167270000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:167251800-167299000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:167252600-167276000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr5:167255400-167264800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:167262800-167264800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:167262800-167265400	Weak transcription	HMEC	breast
7	chr5:167262800-167265800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr5:167262800-167265800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr5:167262800-167266000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:167262800-167267600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr5:167262800-167270600	Weak transcription	HSMM	muscle
12	chr5:167263000-167265600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr5:167263200-167271200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:167263600-167265200	Genic enhancers	NHEK	skin
15	chr5:167264000-167265200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr5:167264200-167269600	Weak transcription	Aorta	Aorta
17	chr5:167264400-167265000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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