Variant report

Variant	rs11738000
Chromosome Location	chr5:167186884-167186885
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167185874..167188275-chr5:167189453..167191702,2	K562	blood:
2	chr5:167182573..167184424-chr5:167185880..167187597,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10045595	0.94[TSI][hapmap];0.88[EUR][1000 genomes]
rs10454960	0.97[TSI][hapmap];0.88[EUR][1000 genomes]
rs10516038	0.82[ASW][hapmap];0.92[CEU][hapmap];0.80[MEX][hapmap];0.97[TSI][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11134472	1.00[CEU][hapmap];0.82[CHB][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11750131	0.92[CEU][hapmap];0.90[LWK][hapmap];0.83[MEX][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12651802	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12657288	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13166995	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13436455	0.88[CEU][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1364368	0.96[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1834118	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2018599	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2337000	0.94[TSI][hapmap];0.86[EUR][1000 genomes]
rs2337020	0.86[JPT][hapmap]
rs2337021	0.93[JPT][hapmap]
rs279414	0.86[JPT][hapmap]
rs2911499	0.96[CEU][hapmap];0.87[CHD][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2973664	0.86[CEU][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2973667	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35366185	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4270713	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4479863	0.87[TSI][hapmap]
rs4583906	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4624810	0.91[CEU][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6861976	0.82[EUR][1000 genomes]
rs6862936	0.84[TSI][hapmap]
rs6863601	0.96[CEU][hapmap];0.83[CHD][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6879227	0.92[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6891311	0.87[TSI][hapmap]
rs6898256	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7703401	0.87[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1032559	chr5:167070888-167210684	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167182200-167191800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167182400-167190200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:167183400-167197200	Weak transcription	HSMMtube	muscle
4	chr5:167183600-167190600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:167184000-167191800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:167185000-167188000	Enhancers	HMEC	breast
7	chr5:167185000-167192800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:167185200-167187000	Enhancers	NH-A	brain
9	chr5:167185200-167188200	Enhancers	NHEK	skin
10	chr5:167185200-167193000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:167186000-167187000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:167186000-167187400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:167186600-167187000	Enhancers	HSMM	muscle
14	chr5:167186600-167190600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr5:167186800-167190400	Weak transcription	Osteobl	bone
16	chr5:167186800-167190600	Weak transcription	NHDF-Ad	bronchial
17	chr5:167186800-167191200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr5:167186800-167197200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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