Variant report

Variant	rs10045595
Chromosome Location	chr5:167230004-167230005
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10454960	1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10462970	0.82[JPT][hapmap]
rs10516038	0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs11134472	0.89[EUR][1000 genomes]
rs11738000	0.94[TSI][hapmap];0.88[EUR][1000 genomes]
rs11750131	0.90[TSI][hapmap]
rs12651802	0.81[EUR][1000 genomes]
rs13166995	0.92[EUR][1000 genomes]
rs1364368	0.84[CEU][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes]
rs2337000	0.82[CEU][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs279400	0.85[JPT][hapmap]
rs2911499	0.84[CEU][hapmap];0.94[TSI][hapmap];0.92[EUR][1000 genomes]
rs2973664	0.90[TSI][hapmap];0.84[EUR][1000 genomes]
rs2973667	0.91[EUR][1000 genomes]
rs4270713	0.92[EUR][1000 genomes]
rs4479863	0.83[CEU][hapmap];0.87[TSI][hapmap]
rs4868807	0.82[JPT][hapmap]
rs6555770	1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs68057166	0.93[ASN][1000 genomes]
rs6861976	0.90[EUR][1000 genomes]
rs6862936	0.82[CEU][hapmap];0.83[TSI][hapmap]
rs6863601	0.84[CEU][hapmap];0.94[TSI][hapmap];0.92[EUR][1000 genomes]
rs6891311	0.83[CEU][hapmap];0.87[TSI][hapmap]
rs6898256	0.89[EUR][1000 genomes]
rs7707689	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7713448	0.87[JPT][hapmap]
rs7714651	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7730435	0.82[JPT][hapmap]
rs7737681	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167225600-167239200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167226200-167237400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:167228200-167233000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:167228400-167231600	Enhancers	NHEK	skin
5	chr5:167228600-167232800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:167228600-167232800	Enhancers	HMEC	breast
7	chr5:167228800-167232800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:167229600-167230400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr5:167229600-167230400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:167229600-167230400	Enhancers	HSMM	muscle
11	chr5:167229600-167230400	Enhancers	NH-A	brain
12	chr5:167229600-167230600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr5:167229600-167230600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr5:167229600-167230600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr5:167229600-167230800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr5:167229600-167231200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr5:167229600-167231400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr5:167229600-167233000	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr5:167229800-167230200	Enhancers	H9 Cell Line	embryonic stem cell
20	chr5:167229800-167230200	Enhancers	Placenta Amnion	Placenta Amnion
21	chr5:167229800-167230400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:167229800-167230600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr5:167229800-167230600	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr5:167229800-167232200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr5:167229800-167232600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr5:167230000-167230600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr5:167230000-167242000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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