Variant report

Variant	rs7707689
Chromosome Location	chr5:167234061-167234062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10045595	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10065043	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs10070839	0.83[EUR][1000 genomes]
rs10454960	0.86[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap]
rs10462970	0.82[JPT][hapmap]
rs1364369	0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs1364370	0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs279400	0.85[JPT][hapmap]
rs4868807	0.82[JPT][hapmap]
rs6555770	1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs67767662	0.83[EUR][1000 genomes]
rs68057166	0.95[ASN][1000 genomes]
rs6869167	0.83[EUR][1000 genomes]
rs7713448	0.87[JPT][hapmap]
rs7714651	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7730435	0.82[JPT][hapmap]
rs7737681	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167225600-167239200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167226200-167237400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:167230000-167242000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr5:167230400-167237000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:167230600-167242000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:167230600-167242000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:167232200-167235800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:167232200-167236600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:167232600-167236800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr5:167232800-167236800	Weak transcription	HMEC	breast
11	chr5:167232800-167239800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:167232800-167241200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr5:167233000-167238400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr5:167233000-167239200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links