Variant report

Variant	rs4868807
Chromosome Location	chr5:167236746-167236747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10036294	0.90[ASN][1000 genomes]
rs10045595	0.82[JPT][hapmap]
rs10065043	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs10462970	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11134468	0.90[CEU][hapmap];0.86[CHB][hapmap];0.83[EUR][1000 genomes]
rs11134470	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11134471	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11949355	0.80[EUR][1000 genomes]
rs11956673	0.83[EUR][1000 genomes]
rs12186530	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12516791	0.89[CEU][hapmap];0.87[CHB][hapmap];0.83[EUR][1000 genomes]
rs12520082	0.90[CEU][hapmap];0.86[CHB][hapmap];0.83[EUR][1000 genomes]
rs1364370	0.95[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs17069129	0.91[CEU][hapmap];0.87[CHB][hapmap];0.83[EUR][1000 genomes]
rs2337000	0.86[CHB][hapmap]
rs4479863	0.86[CHB][hapmap]
rs4869068	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4869072	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57533222	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57674698	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58347375	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58922769	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6555769	0.88[ASN][1000 genomes]
rs6861976	0.92[ASN][1000 genomes]
rs6862936	0.82[CHB][hapmap]
rs6891311	0.86[CHB][hapmap]
rs6895940	0.87[CHB][hapmap]
rs72832012	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72832022	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7703715	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7707689	0.82[JPT][hapmap]
rs7708656	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7714651	0.82[JPT][hapmap]
rs7730435	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7737681	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167225600-167239200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167226200-167237400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:167230000-167242000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr5:167230400-167237000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:167230600-167242000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:167230600-167242000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:167232600-167236800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:167232800-167236800	Weak transcription	HMEC	breast
9	chr5:167232800-167239800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:167232800-167241200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr5:167233000-167238400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr5:167233000-167239200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:167236000-167240000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr5:167236600-167237000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:167236600-167240000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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