Variant report

Variant	rs4869068
Chromosome Location	chr5:167163022-167163023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10065043	0.96[ASN][1000 genomes]
rs10454965	0.86[EUR][1000 genomes]
rs11134468	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11134470	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11134471	0.83[EUR][1000 genomes]
rs11949355	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11956673	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12186530	0.85[EUR][1000 genomes]
rs12516791	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12520082	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17069129	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2337000	0.89[ASN][1000 genomes]
rs4479863	0.92[ASN][1000 genomes]
rs4868807	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4869072	0.94[EUR][1000 genomes]
rs57533222	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57674698	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58347375	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58922769	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60161912	0.81[EUR][1000 genomes]
rs61165988	0.94[ASN][1000 genomes]
rs67767662	0.94[ASN][1000 genomes]
rs6862936	0.96[ASN][1000 genomes]
rs6869167	0.99[ASN][1000 genomes]
rs6891311	0.92[ASN][1000 genomes]
rs6898153	0.90[EUR][1000 genomes]
rs72832005	0.91[EUR][1000 genomes]
rs72832012	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72832022	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7703715	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7708656	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7730435	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7737681	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1032559	chr5:167070888-167210684	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167152600-167170000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:167153000-167165800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr5:167157800-167170200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:167158000-167170000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:167158000-167170000	Weak transcription	NH-A	brain
6	chr5:167158000-167170600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr5:167158400-167163600	Weak transcription	NHEK	skin
8	chr5:167158800-167170800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:167159200-167171000	Weak transcription	HSMM	muscle
10	chr5:167161400-167164400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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