Variant report

Variant	rs72832005
Chromosome Location	chr5:167178725-167178726
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10454965	0.84[EUR][1000 genomes]
rs11134468	0.91[EUR][1000 genomes]
rs11134470	0.83[EUR][1000 genomes]
rs11949355	0.88[EUR][1000 genomes]
rs11956673	0.91[EUR][1000 genomes]
rs12186530	0.83[EUR][1000 genomes]
rs12516791	0.91[EUR][1000 genomes]
rs12520082	0.91[EUR][1000 genomes]
rs17069129	0.91[EUR][1000 genomes]
rs4869068	0.91[EUR][1000 genomes]
rs4869072	0.91[EUR][1000 genomes]
rs57533222	0.81[EUR][1000 genomes]
rs57674698	0.83[EUR][1000 genomes]
rs58347375	0.91[EUR][1000 genomes]
rs58922769	0.83[EUR][1000 genomes]
rs6898153	0.82[EUR][1000 genomes]
rs72830080	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72830081	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs72832012	0.86[EUR][1000 genomes]
rs72832022	0.91[EUR][1000 genomes]
rs7703715	0.91[EUR][1000 genomes]
rs7708656	0.91[EUR][1000 genomes]
rs7730435	0.91[EUR][1000 genomes]
rs7737681	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1032559	chr5:167070888-167210684	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167171000-167181200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr5:167171600-167181800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:167171800-167180000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:167171800-167180000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:167172400-167180400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:167177200-167179000	Enhancers	HSMM	muscle
7	chr5:167177400-167178800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr5:167177600-167178800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:167178200-167179000	Enhancers	Fetal Lung	lung
10	chr5:167178200-167181800	Weak transcription	HSMMtube	muscle
11	chr5:167178200-167182000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr5:167178400-167180800	Weak transcription	NHDF-Ad	bronchial
13	chr5:167178600-167182000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr5:167178600-167186200	Weak transcription	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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