Variant report

Variant	rs11949355
Chromosome Location	chr5:167176413-167176414
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10065043	0.92[ASN][1000 genomes]
rs10454965	0.84[EUR][1000 genomes]
rs11134468	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11134470	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11134471	0.80[EUR][1000 genomes]
rs11956673	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12186530	0.83[EUR][1000 genomes]
rs12516791	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12520082	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17069129	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2337000	0.89[ASN][1000 genomes]
rs4479863	0.95[ASN][1000 genomes]
rs4868807	0.80[EUR][1000 genomes]
rs4869068	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4869072	0.91[EUR][1000 genomes]
rs57533222	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57674698	0.83[EUR][1000 genomes]
rs58347375	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58922769	0.83[EUR][1000 genomes]
rs61165988	0.94[ASN][1000 genomes]
rs67767662	0.92[ASN][1000 genomes]
rs6862936	0.92[ASN][1000 genomes]
rs6869167	0.91[ASN][1000 genomes]
rs6891311	0.94[ASN][1000 genomes]
rs6898153	0.88[EUR][1000 genomes]
rs72832005	0.88[EUR][1000 genomes]
rs72832012	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72832022	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7703715	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7708656	0.91[EUR][1000 genomes]
rs7730435	0.91[EUR][1000 genomes]
rs7737681	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1032559	chr5:167070888-167210684	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167170400-167177200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167171000-167181200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr5:167171600-167181800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:167171800-167177200	Weak transcription	HSMM	muscle
5	chr5:167171800-167180000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:167171800-167180000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:167172400-167180400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links