Variant report

Variant	rs2337000
Chromosome Location	chr5:167188364-167188365
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10045430	0.90[JPT][hapmap]
rs10045595	0.82[CEU][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs10065043	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10454960	0.82[CEU][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes]
rs10462970	0.91[CHB][hapmap];0.81[CHD][hapmap]
rs10516038	0.97[TSI][hapmap];0.95[EUR][1000 genomes]
rs11134468	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11134471	0.86[CHB][hapmap];0.83[CHD][hapmap]
rs11738000	0.94[TSI][hapmap];0.86[EUR][1000 genomes]
rs11750131	0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs11949355	0.89[ASN][1000 genomes]
rs11956673	0.91[ASN][1000 genomes]
rs12516791	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12520082	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12520148	0.91[JPT][hapmap]
rs12651802	0.94[EUR][1000 genomes]
rs12657288	0.91[EUR][1000 genomes]
rs13166995	0.82[EUR][1000 genomes]
rs13436455	0.86[EUR][1000 genomes]
rs1364368	0.94[TSI][hapmap];0.83[EUR][1000 genomes]
rs1364370	0.91[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs17069129	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2018599	0.95[EUR][1000 genomes]
rs2337017	0.91[JPT][hapmap]
rs2337018	0.85[JPT][hapmap]
rs279402	0.91[JPT][hapmap]
rs2911499	0.94[TSI][hapmap];0.83[EUR][1000 genomes]
rs2973664	0.97[TSI][hapmap];0.90[EUR][1000 genomes]
rs2973667	0.84[EUR][1000 genomes]
rs35366185	0.84[EUR][1000 genomes]
rs4270713	0.83[EUR][1000 genomes]
rs4479863	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4583906	0.84[EUR][1000 genomes]
rs4624810	0.85[EUR][1000 genomes]
rs4628015	0.91[JPT][hapmap]
rs4868807	0.86[CHB][hapmap]
rs4869067	0.89[JPT][hapmap]
rs4869068	0.89[ASN][1000 genomes]
rs58347375	0.93[ASN][1000 genomes]
rs61165988	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67767662	0.93[ASN][1000 genomes]
rs6861976	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6862936	0.91[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6863601	0.94[TSI][hapmap];0.83[EUR][1000 genomes]
rs6869167	0.90[ASN][1000 genomes]
rs6879227	0.92[EUR][1000 genomes]
rs6891311	0.91[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6895940	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6898153	0.85[JPT][hapmap]
rs6898256	0.82[EUR][1000 genomes]
rs72832012	0.83[ASN][1000 genomes]
rs7703401	0.81[EUR][1000 genomes]
rs7717495	0.86[JPT][hapmap]
rs7730435	0.86[CHB][hapmap]
rs7737681	0.91[CHB][hapmap];0.83[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1032559	chr5:167070888-167210684	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167182200-167191800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167182400-167190200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:167183400-167197200	Weak transcription	HSMMtube	muscle
4	chr5:167183600-167190600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:167184000-167191800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:167185000-167192800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:167185200-167193000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:167186600-167190600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr5:167186800-167190400	Weak transcription	Osteobl	bone
10	chr5:167186800-167190600	Weak transcription	NHDF-Ad	bronchial
11	chr5:167186800-167191200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr5:167186800-167197200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:167187000-167190400	Weak transcription	NH-A	brain
14	chr5:167187400-167189600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:167187600-167190200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:167188000-167190000	Weak transcription	HMEC	breast
17	chr5:167188000-167191600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr5:167188200-167190000	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links