Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10045430	0.87[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs10065043	0.85[JPT][hapmap]
rs11134468	0.86[JPT][hapmap]
rs12516791	0.86[JPT][hapmap]
rs12520082	0.86[JPT][hapmap]
rs12520148	0.87[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs17069129	0.86[JPT][hapmap]
rs2337000	0.86[JPT][hapmap]
rs2337017	0.86[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs2337018	0.87[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs2337020	0.82[CEU][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes]
rs279402	0.82[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs4285252	0.88[ASN][1000 genomes]
rs4302613	0.87[ASN][1000 genomes]
rs4479863	0.86[JPT][hapmap]
rs4628015	0.91[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs4869067	0.86[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs60161912	0.89[ASN][1000 genomes]
rs60495422	0.89[ASN][1000 genomes]
rs6862936	0.86[JPT][hapmap]
rs6891311	0.86[JPT][hapmap]
rs6895940	0.86[JPT][hapmap]
rs6898153	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1032559	chr5:167070888-167210684	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167152600-167170000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:167153000-167165800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr5:167157400-167160800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:167157800-167170200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:167158000-167170000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:167158000-167170000	Weak transcription	NH-A	brain
7	chr5:167158000-167170600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr5:167158400-167163600	Weak transcription	NHEK	skin
9	chr5:167158800-167170800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr5:167159200-167171000	Weak transcription	HSMM	muscle
11	chr5:167160200-167161400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:167160400-167160800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search: