Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10045595	0.89[EUR][1000 genomes]
rs10454960	0.89[EUR][1000 genomes]
rs10516038	0.86[EUR][1000 genomes]
rs11134472	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11738000	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11750131	0.82[EUR][1000 genomes]
rs12651802	0.85[EUR][1000 genomes]
rs12657288	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13166995	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1364368	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1424290	0.86[AFR][1000 genomes]
rs1834118	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2018599	0.85[EUR][1000 genomes]
rs2337000	0.82[EUR][1000 genomes]
rs2911499	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2973664	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2973667	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4270713	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6861976	0.84[EUR][1000 genomes]
rs6863601	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6879227	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167203600-167218800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167209400-167214600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:167210800-167217200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:167210800-167225000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:167211000-167214600	Weak transcription	Fetal Muscle Leg	muscle
6	chr5:167211200-167219200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr5:167211800-167214600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:167212400-167214800	Enhancers	Osteobl	bone
9	chr5:167212600-167215200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:167212600-167217600	Weak transcription	HSMM	muscle
11	chr5:167212600-167219000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr5:167212800-167215000	Enhancers	NHDF-Ad	bronchial
13	chr5:167212800-167218800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr5:167213600-167214800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr5:167214000-167214800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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