Variant report

Variant	rs2337021
Chromosome Location	chr5:167158089-167158090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11738000	0.93[JPT][hapmap]
rs12520148	0.82[TSI][hapmap]
rs2337017	0.82[TSI][hapmap]
rs2337020	0.85[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs279400	0.93[CEU][hapmap]
rs279402	0.82[TSI][hapmap]
rs279403	0.84[MEX][hapmap]
rs279404	0.84[MEX][hapmap]
rs4628015	0.82[TSI][hapmap]
rs4869066	0.82[CEU][hapmap];0.81[MKK][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs7713448	0.88[CEU][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1032559	chr5:167070888-167210684	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167152600-167170000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:167153000-167165800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr5:167155800-167158400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr5:167156000-167158400	Enhancers	HMEC	breast
5	chr5:167156000-167158400	Enhancers	HSMM	muscle
6	chr5:167156000-167158400	Enhancers	NHEK	skin
7	chr5:167156000-167160400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:167156400-167158200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr5:167156800-167158400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr5:167156800-167158400	Enhancers	Hela-S3	cervix
11	chr5:167156800-167158600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr5:167157400-167158200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr5:167157400-167159200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr5:167157400-167160800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr5:167157800-167158400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr5:167157800-167158600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:167157800-167159400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr5:167157800-167170200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr5:167158000-167158200	Enhancers	Adipose Nuclei	Adipose
20	chr5:167158000-167158200	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr5:167158000-167159200	Weak transcription	Osteobl	bone
22	chr5:167158000-167170000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr5:167158000-167170000	Weak transcription	NH-A	brain
24	chr5:167158000-167170600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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