Variant report

Variant	rs13437447
Chromosome Location	chr6:37723981-37723982
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13437039	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16890159	0.85[ASN][1000 genomes]
rs912454	0.85[ASN][1000 genomes]
rs912456	0.85[ASN][1000 genomes]
rs9470691	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9470695	0.85[ASN][1000 genomes]
rs9470696	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37705800-37724200	Weak transcription	Right Atrium	heart
2	chr6:37711400-37729400	Weak transcription	Gastric	stomach
3	chr6:37723600-37724400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:37723800-37724000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:37723800-37724400	Bivalent Enhancer	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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