Variant report

Variant	rs9470691
Chromosome Location	chr6:37726856-37726857
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13437039	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13437447	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16890159	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57692841	0.83[EUR][1000 genomes]
rs912454	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs912456	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9470695	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9470696	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37711400-37729400	Weak transcription	Gastric	stomach
2	chr6:37726000-37730600	Enhancers	Placenta	Placenta
3	chr6:37726200-37728400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr6:37726400-37727000	Bivalent Enhancer	HepG2	liver
5	chr6:37726400-37727800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:37726600-37727200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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