Variant report

Variant	rs13437864
Chromosome Location	chr7:150522565-150522566
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10452848	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10952288	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10952290	0.91[EUR][1000 genomes]
rs10952291	0.91[EUR][1000 genomes]
rs11767582	0.88[JPT][hapmap]
rs11772167	0.88[JPT][hapmap]
rs12375203	0.92[EUR][1000 genomes]
rs2888675	0.83[EUR][1000 genomes]
rs34693448	0.85[EUR][1000 genomes]
rs35092045	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35976727	0.83[EUR][1000 genomes]
rs4725367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4725951	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4725961	0.85[EUR][1000 genomes]
rs4725962	0.85[EUR][1000 genomes]
rs6464114	0.85[CEU][hapmap];0.80[TSI][hapmap];0.86[EUR][1000 genomes]
rs6977381	0.80[MEX][hapmap];0.80[TSI][hapmap];0.83[EUR][1000 genomes]
rs717657	0.88[JPT][hapmap]
rs7785283	0.88[JPT][hapmap]
rs7798657	0.83[EUR][1000 genomes]
rs9640170	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv967475	chr7:150323577-150610034	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs13437864	AGAP3	cis	cerebellum	SCAN
rs13437864	ZNF862	cis	cerebellum	SCAN
rs13437864	AOC1	cis	Heart Left Ventricle	GTEx
rs13437864	TMEM176A	cis	lymphoblastoid	seeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150503400-150528000	Weak transcription	Ovary	ovary
2	chr7:150512000-150522800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr7:150518400-150523200	Weak transcription	Right Atrium	heart
4	chr7:150519800-150523400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr7:150519800-150525200	Enhancers	Fetal Heart	heart
6	chr7:150520200-150523600	Enhancers	Placenta	Placenta
7	chr7:150520800-150522800	Enhancers	Liver	Liver
8	chr7:150521800-150523200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:150522000-150523400	Enhancers	Right Ventricle	heart
10	chr7:150522000-150523800	Enhancers	Left Ventricle	heart
11	chr7:150522400-150523000	Enhancers	Duodenum Mucosa	Duodenum
12	chr7:150522400-150523000	Weak transcription	Fetal Stomach	stomach
13	chr7:150522400-150523000	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr7:150522400-150524600	Enhancers	Fetal Intestine Small	intestine
15	chr7:150522400-150542800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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