Variant report

Variant	rs6977381
Chromosome Location	chr7:150542646-150542647
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:150542584..150544794-chr7:150560485..150563293,2	MCF-7	breast:
2	chr7:150517223..150519461-chr7:150541701..150544355,2	K562	blood:
3	chr7:150541762..150544255-chr7:150551164..150553467,2	K562	blood:
4	chr7:150540555..150543117-chr7:150543855..150545586,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10240738	0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10452848	0.83[EUR][1000 genomes]
rs10952288	0.83[EUR][1000 genomes]
rs11771001	0.93[JPT][hapmap]
rs13437864	0.80[MEX][hapmap];0.80[TSI][hapmap];0.83[EUR][1000 genomes]
rs1476867	0.88[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs2888675	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34693448	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35092045	0.82[EUR][1000 genomes]
rs35976727	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4725367	0.80[MEX][hapmap];0.80[TSI][hapmap];0.83[EUR][1000 genomes]
rs4725961	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4725962	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6464114	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7798657	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs887588	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv967475	chr7:150323577-150610034	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	esv2758140	chr7:150538821-150663697	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	esv2759574	chr7:150538821-150663697	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6977381	ZNF862	cis	cerebellum	SCAN
rs6977381	AGAP3	cis	cerebellum	SCAN

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150522400-150542800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:150539600-150553800	Weak transcription	Liver	Liver
3	chr7:150541800-150543400	Enhancers	Fetal Muscle Trunk	muscle
4	chr7:150541800-150544400	Enhancers	Fetal Muscle Leg	muscle
5	chr7:150542200-150543000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:150542200-150543200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr7:150542200-150543200	Enhancers	Fetal Intestine Large	intestine
8	chr7:150542200-150543200	Enhancers	Fetal Lung	lung
9	chr7:150542200-150543400	Enhancers	Fetal Heart	heart
10	chr7:150542200-150543800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr7:150542200-150544000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr7:150542400-150542800	Enhancers	Primary hematopoietic stem cells	blood
13	chr7:150542400-150543000	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr7:150542400-150543000	Enhancers	Brain Cingulate Gyrus	brain
15	chr7:150542400-150543200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr7:150542400-150543200	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr7:150542400-150543200	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr7:150542400-150543400	Enhancers	Colon Smooth Muscle	Colon
19	chr7:150542400-150543600	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr7:150542400-150543600	Enhancers	HSMMtube	muscle
21	chr7:150542600-150543000	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr7:150542600-150543200	Enhancers	Fetal Intestine Small	intestine
23	chr7:150542600-150543200	Enhancers	Right Ventricle	heart
24	chr7:150542600-150543400	Enhancers	Brain Hippocampus Middle	brain
25	chr7:150542600-150543400	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr7:150542600-150543400	Bivalent Enhancer	Placenta	Placenta
27	chr7:150542600-150543400	Enhancers	Fetal Stomach	stomach
28	chr7:150542600-150543400	Enhancers	Rectal Mucosa Donor 29	rectum

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