Variant report

Variant	rs13437980
Chromosome Location	chr7:32997749-32997750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:32995811..32998630-chr7:33147873..33150650,5	MCF-7	breast:
2	chr7:32928752..32933141-chr7:32994641..32998863,8	K562	blood:
3	chr22:50963472..50964178-chr7:32996987..32997953,2	Hela-S3	cervix:
4	chr7:32929839..32934078-chr7:32995806..32999171,10	MCF-7	breast:
5	chr7:32929772..32933437-chr7:32994773..32998551,6	MCF-7	breast:
6	chr10:71389270..71390191-chr7:32997343..32997869,2	HCT-116	colon:
7	chr6:2857804..2858647-chr7:32997103..32997825,2	Hela-S3	cervix:
8	chr20:46129538..46131406-chr7:32995757..32997764,2	MCF-7	breast:
9	chr7:32997465..32998398-chr9:139304529..139305102,2	Hela-S3	cervix:
10	chr1:205600552..205601275-chr7:32996850..32997837,2	Hela-S3	cervix:
11	chr7:32929936..32932175-chr7:32996897..32998446,2	K562	blood:
12	chr7:32996766..32998569-chr7:33027965..33030293,2	K562	blood:
13	chr7:32982709..32984575-chr7:32997023..32999117,2	K562	blood:
14	chr7:32981007..32984575-chr7:32996149..32999305,3	K562	blood:
15	chr7:32995362..32998530-chr7:33097317..33102837,7	MCF-7	breast:
16	chr1:45986841..45987635-chr7:32997004..32997876,2	Hela-S3	cervix:
17	chr6:159270909..159271734-chr7:32997213..32997774,2	Hela-S3	cervix:
18	chr7:32997687..32999563-chr7:33147479..33150290,2	K562	blood:
19	chr6:97371814..97372480-chr7:32997365..32997998,2	Hela-S3	cervix:
20	chr7:32989735..32994052-chr7:32995992..32998490,3	MCF-7	breast:
21	chr7:32982489..32988008-chr7:32995538..32999914,10	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000122642	Chromatin interaction
ENSG00000205763	Chromatin interaction
ENSG00000122643	Chromatin interaction
ENSG00000170852	Chromatin interaction
ENSG00000224573	Chromatin interaction
ENSG00000124151	Chromatin interaction
ENSG00000171224	Chromatin interaction
ENSG00000164610	Chromatin interaction
ENSG00000158711	Chromatin interaction
ENSG00000117450	Chromatin interaction
ENSG00000130489	Chromatin interaction
ENSG00000165689	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11771075	0.85[ASN][1000 genomes]
rs13247369	0.85[ASN][1000 genomes]
rs13307990	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13311608	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17356044	0.85[ASN][1000 genomes]
rs2465899	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2598304	0.86[ASN][1000 genomes]
rs34556400	0.84[ASN][1000 genomes]
rs4723224	0.87[ASN][1000 genomes]
rs55847931	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6970641	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6970869	0.86[ASN][1000 genomes]
rs7784449	0.81[ASN][1000 genomes]
rs7786644	0.85[ASN][1000 genomes]
rs7787645	0.85[ASN][1000 genomes]
rs7790246	0.85[ASN][1000 genomes]
rs7806466	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7808290	0.85[ASN][1000 genomes]
rs7809397	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029220	chr7:32921484-33262190	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	esv3478254	chr7:32956181-33133477	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	esv3478255	chr7:32956181-33133477	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	esv3528603	chr7:32956254-33133429	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
5	esv3528604	chr7:32956254-33133429	Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	esv3366191	chr7:32956659-33134592	Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
7	nsv1033096	chr7:32965040-33039206	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
8	esv3418466	chr7:32968130-33138898	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
9	esv3354398	chr7:32996277-32998775	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:32996200-32997800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr7:32996200-32997800	Active TSS	Rectal Mucosa Donor 31	rectum
3	chr7:32996200-32997800	Active TSS	Hela-S3	cervix
4	chr7:32996200-32998000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:32996200-32998000	Active TSS	Breast Myoepithelial Primary Cells	Breast
6	chr7:32996200-32998000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:32996200-32998000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:32996200-32998000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
9	chr7:32996200-32998000	Active TSS	Fetal Lung	lung
10	chr7:32996200-32998000	Active TSS	NH-A	brain
11	chr7:32996200-32998200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:32996200-32998200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:32996200-32998200	Active TSS	Muscle Satellite Cultured Cells	--
14	chr7:32996200-32998200	Active TSS	HSMM	muscle
15	chr7:32996200-32998400	Active TSS	Rectal Smooth Muscle	rectum
16	chr7:32996200-32998400	Active TSS	HSMMtube	muscle
17	chr7:32996200-32998600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr7:32996200-32998600	Active TSS	A549	lung
19	chr7:32996400-32997800	Active TSS	Fetal Intestine Small	intestine
20	chr7:32996400-32997800	Active TSS	Fetal Stomach	stomach
21	chr7:32996400-32997800	Active TSS	HepG2	liver
22	chr7:32996400-32998000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
23	chr7:32996400-32998000	Active TSS	Colonic Mucosa	Colon
24	chr7:32996400-32998000	Active TSS	Fetal Intestine Large	intestine
25	chr7:32996400-32998000	Active TSS	Osteobl	bone
26	chr7:32996400-32998200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
27	chr7:32996400-32998200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr7:32996400-32998200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr7:32996400-32998400	Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr7:32996600-32997800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:32996600-32997800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
32	chr7:32996600-32997800	Flanking Active TSS	Primary hematopoietic stem cells	blood
33	chr7:32996600-32997800	Active TSS	Brain Cingulate Gyrus	brain
34	chr7:32996600-32997800	Active TSS	Fetal Heart	heart
35	chr7:32996600-32997800	Active TSS	Fetal Kidney	kidney
36	chr7:32996600-32997800	Active TSS	Placenta Amnion	Placenta Amnion
37	chr7:32996600-32997800	Active TSS	Sigmoid Colon	Sigmoid Colon
38	chr7:32996600-32997800	Bivalent/Poised TSS	Thymus	Thymus
39	chr7:32996600-32998000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr7:32996600-32998000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr7:32996600-32998000	Active TSS	H9 Cell Line	embryonic stem cell
42	chr7:32996600-32998000	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr7:32996600-32998000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr7:32996600-32998000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
45	chr7:32996600-32998000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr7:32996600-32998000	Active TSS	Aorta	Aorta
47	chr7:32996600-32998000	Bivalent/Poised TSS	Fetal Thymus	thymus
48	chr7:32996600-32998000	Active TSS	Ovary	ovary
49	chr7:32996600-32998000	Active TSS	Pancreas	Pancrea
50	chr7:32996600-32998000	Active TSS	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links