Variant report

Variant	rs7806466
Chromosome Location	chr7:32980607-32980608
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:32929776..32933176-chr7:32979221..32984586,9	K562	blood:
2	chr7:32929776..32933604-chr7:32979221..32983668,8	K562	blood:
3	chr7:32979720..32982452-chr7:32995227..32996993,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170852	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11771075	0.85[ASN][1000 genomes]
rs13247369	0.85[ASN][1000 genomes]
rs13307990	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13311608	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13437980	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17356044	0.84[ASN][1000 genomes]
rs2465899	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2598304	0.84[ASN][1000 genomes]
rs34556400	0.83[ASN][1000 genomes]
rs4723224	0.82[ASN][1000 genomes]
rs55847931	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6970641	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6970869	0.84[ASN][1000 genomes]
rs7786644	0.85[ASN][1000 genomes]
rs7787645	0.85[ASN][1000 genomes]
rs7790246	0.85[ASN][1000 genomes]
rs7808290	0.85[ASN][1000 genomes]
rs7809397	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029220	chr7:32921484-33262190	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	esv3478254	chr7:32956181-33133477	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	esv3478255	chr7:32956181-33133477	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	esv3528603	chr7:32956254-33133429	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
5	esv3528604	chr7:32956254-33133429	Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	esv3366191	chr7:32956659-33134592	Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
7	nsv1033096	chr7:32965040-33039206	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
8	esv3418466	chr7:32968130-33138898	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:32947600-32981200	Weak transcription	Stomach Mucosa	stomach
2	chr7:32955000-32981000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:32956600-32981000	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr7:32956600-32981000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr7:32966800-32980800	Weak transcription	Fetal Kidney	kidney
6	chr7:32969400-32980800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:32969600-32981000	Weak transcription	Primary B cells from peripheral blood	blood
8	chr7:32970200-32981200	Weak transcription	Liver	Liver
9	chr7:32971000-32981400	Weak transcription	Esophagus	oesophagus
10	chr7:32971600-32980800	Weak transcription	Hela-S3	cervix
11	chr7:32971600-32981000	Weak transcription	Colonic Mucosa	Colon
12	chr7:32971800-32980800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr7:32971800-32980800	Weak transcription	HMEC	breast
14	chr7:32972600-32981000	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr7:32973400-32980800	Weak transcription	NHEK	skin
16	chr7:32973400-32981000	Weak transcription	Fetal Intestine Large	intestine
17	chr7:32973600-32980800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr7:32973600-32980800	Weak transcription	NH-A	brain
19	chr7:32973600-32981600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr7:32973800-32980800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr7:32976400-32980800	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr7:32977200-32980800	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr7:32977600-32980800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr7:32977600-32980800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr7:32977600-32981000	Weak transcription	Aorta	Aorta
26	chr7:32977600-32981600	Weak transcription	Gastric	stomach
27	chr7:32977800-32980800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr7:32977800-32980800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr7:32977800-32980800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr7:32977800-32980800	Weak transcription	Adipose Nuclei	Adipose
31	chr7:32977800-32980800	Weak transcription	Brain Germinal Matrix	brain
32	chr7:32977800-32980800	Weak transcription	Brain Substantia Nigra	brain
33	chr7:32977800-32980800	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr7:32977800-32981000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr7:32977800-32981000	Weak transcription	Right Ventricle	heart
36	chr7:32977800-32981200	Weak transcription	Psoas Muscle	Psoas
37	chr7:32977800-32981200	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr7:32977800-32981400	Weak transcription	Placenta	Placenta
39	chr7:32977800-32981400	Weak transcription	Lung	lung
40	chr7:32977800-32981400	Weak transcription	Pancreas	Pancrea
41	chr7:32977800-32981400	Weak transcription	Small Intestine	intestine
42	chr7:32977800-32981800	Weak transcription	Spleen	Spleen
43	chr7:32978000-32980800	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr7:32978000-32980800	Weak transcription	Fetal Lung	lung
45	chr7:32978000-32980800	Weak transcription	HepG2	liver
46	chr7:32978000-32981000	Weak transcription	Brain Hippocampus Middle	brain
47	chr7:32978000-32981000	Weak transcription	Fetal Intestine Small	intestine
48	chr7:32978400-32980800	Enhancers	Duodenum Smooth Muscle	Duodenum
49	chr7:32978800-32980800	Weak transcription	Osteobl	bone
50	chr7:32979000-32980800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links