Variant report

Variant	rs13438469
Chromosome Location	chr7:14294745-14294746
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1011539	0.93[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10265160	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10265875	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10265888	0.93[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10280363	0.93[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62445616	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62445617	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62445618	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6956317	0.93[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1025437	chr7:14226741-14295671	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
3	nsv1033406	chr7:14258197-14294745	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv8054	chr7:14294529-14299547	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14292400-14299400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:14293400-14297000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr7:14293800-14295200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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