Variant report

Variant	rs62445618
Chromosome Location	chr7:14293722-14293723
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1011539	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10265160	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10265875	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10265888	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10280363	0.83[EUR][1000 genomes]
rs13438469	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62445616	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62445617	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62445620	0.80[AMR][1000 genomes]
rs6956317	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1025437	chr7:14226741-14295671	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
3	nsv1033406	chr7:14258197-14294745	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14292400-14299400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:14293400-14297000	Enhancers	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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