Variant report

Variant	rs13438827
Chromosome Location	chr8:79287955-79287956
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10504667	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11987891	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs16905657	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16905662	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4541900	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61394970	0.92[ASN][1000 genomes]
rs73688913	1.00[EUR][1000 genomes]
rs73688914	1.00[EUR][1000 genomes]
rs73688937	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73688941	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73688942	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73688943	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73688944	0.97[ASN][1000 genomes]
rs73688965	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73688971	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761180	chr8:79195937-79291581	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv891056	chr8:79206819-79394667	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1017218	chr8:79287819-79434844	Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv539652	chr8:79287819-79434844	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79287200-79289600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr8:79287400-79288400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:79287400-79289200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:79287800-79290000	Enhancers	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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