Variant report
| Variant | rs16905662 |
|---|---|
| Chromosome Location | chr8:79315190-79315191 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:8)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:8 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | MAFF | chr8:79315058-79315423 | HepG2 | liver: | n/a | n/a |
| 2 | MAFK | chr8:79315058-79315461 | HepG2 | liver: | n/a | chr8:79315228-79315244 chr8:79315226-79315246 |
| 3 | MAFK | chr8:79315054-79315520 | HepG2 | liver: | n/a | chr8:79315228-79315244 chr8:79315226-79315246 |
| 4 | MAFK | chr8:79315142-79315351 | H1-hESC | embryonic stem cell: | n/a | chr8:79315228-79315244 chr8:79315226-79315246 |
| 5 | MAFF | chr8:79315100-79315393 | K562 | blood: | n/a | n/a |
| 6 | MAFK | chr8:79315092-79315409 | Hela-S3 | cervix: | n/a | chr8:79315228-79315244 chr8:79315226-79315246 |
| 7 | MAFK | chr8:79315053-79315417 | IMR90 | lung: | n/a | chr8:79315228-79315244 chr8:79315226-79315246 |
| 8 | MAFK | chr8:79315058-79315362 | K562 | blood: | n/a | chr8:79315228-79315244 chr8:79315226-79315246 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RNU6-1220P | TF binding region |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs10504667 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11987891 | 0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap] |
| rs13438827 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs16905657 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4541900 | 0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61394970 | 0.83[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs73688913 | 1.00[EUR][1000 genomes] |
| rs73688914 | 1.00[EUR][1000 genomes] |
| rs73688937 | 1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs73688941 | 0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs73688942 | 0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73688943 | 0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73688944 | 0.87[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73688965 | 0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73688971 | 0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv891056 | chr8:79206819-79394667 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1017218 | chr8:79287819-79434844 | Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv539652 | chr8:79287819-79434844 | Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
