Variant report

Variant	rs13439499
Chromosome Location	chr8:4847249-4847250
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10103830	0.93[CEU][hapmap];0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs10103971	0.85[ASN][1000 genomes]
rs10113551	0.85[ASN][1000 genomes]
rs11778280	1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[ASN][1000 genomes]
rs11781399	0.93[CEU][hapmap];0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs17071958	0.86[CHB][hapmap]
rs17071968	0.94[CEU][hapmap];0.86[CHB][hapmap];0.91[GIH][hapmap]
rs28440937	0.86[ASN][1000 genomes]
rs2924719	0.80[CHB][hapmap]
rs3860870	0.87[CEU][hapmap]
rs4593564	0.86[CHB][hapmap];0.85[GIH][hapmap]
rs4875425	0.82[CHB][hapmap]
rs7831577	0.82[ASN][1000 genomes]
rs7832116	0.94[CEU][hapmap];0.81[CHB][hapmap];0.91[GIH][hapmap];0.90[MEX][hapmap];0.83[ASN][1000 genomes]
rs7833750	0.81[CEU][hapmap];0.90[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.85[ASN][1000 genomes]
rs9657374	0.82[CHB][hapmap]
rs9657406	0.94[CEU][hapmap];0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs9657407	0.94[CEU][hapmap];0.95[CHB][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv609876	chr8:4494811-5092970	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1029480	chr8:4497596-5081032	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv498130	chr8:4532988-5176376	Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1031026	chr8:4771072-5054326	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:4832000-4848200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:4835600-4848200	Weak transcription	Brain Angular Gyrus	brain
3	chr8:4840200-4847600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:4846800-4847400	Bivalent Enhancer	Fetal Heart	heart
5	chr8:4847000-4847400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr8:4847200-4847600	Active TSS	Brain Anterior Caudate	brain
7	chr8:4847200-4851400	Active TSS	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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