Variant report

Variant	rs17071968
Chromosome Location	chr8:4829536-4829537
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10103830	1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10103971	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10113551	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11778280	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11781399	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13439499	0.94[CEU][hapmap];0.86[CHB][hapmap];0.91[GIH][hapmap]
rs17071958	1.00[CHB][hapmap]
rs28440937	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2924719	0.85[CHB][hapmap]
rs3860870	0.94[CEU][hapmap];0.81[MEX][hapmap]
rs4593564	1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];0.86[TSI][hapmap];0.86[YRI][hapmap]
rs4875425	0.83[JPT][hapmap]
rs62491284	0.89[EUR][1000 genomes]
rs7007684	0.82[CHB][hapmap]
rs7831577	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7832116	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[GIH][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7833750	0.87[CEU][hapmap];0.85[CHB][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9657374	0.86[CHB][hapmap]
rs9657406	1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9657407	1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv609876	chr8:4494811-5092970	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1029480	chr8:4497596-5081032	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv498130	chr8:4532988-5176376	Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1031026	chr8:4771072-5054326	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1025322	chr8:4818393-4829588	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1028164	chr8:4818462-4829588	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1031402	chr8:4827087-4842934	Strong transcription Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links