Variant report

Variant	rs13439567
Chromosome Location	chr8:62051816-62051817
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:61567081..61569634-chr8:62050277..62052303,2	K562	blood:
2	chr8:62051677..62052206-chr8:62381213..62382143,4	K562	blood:
3	chr8:61589463..61592430-chr8:62051338..62054107,2	K562	blood:
4	chr8:62051294..62051870-chr8:62381197..62381952,2	MCF-7	breast:
5	chr8:62050920..62052213-chr8:62152653..62153352,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171316	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10093561	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10101715	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10103997	0.84[CEU][hapmap]
rs10110500	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10112331	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10113435	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10113823	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10216609	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12681792	0.82[EUR][1000 genomes]
rs28414183	0.82[AFR][1000 genomes]
rs7001997	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7830831	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv465698	chr8:62036793-62179465	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv611426	chr8:62036793-62179465	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1026243	chr8:62039073-62101123	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62051000-62052600	Enhancers	Fetal Heart	heart
2	chr8:62051400-62052000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:62051400-62052000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
4	chr8:62051400-62052000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr8:62051400-62052000	Active TSS	Brain Germinal Matrix	brain
6	chr8:62051400-62052000	Bivalent/Poised TSS	Fetal Stomach	stomach
7	chr8:62051400-62052000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
8	chr8:62051400-62052200	Bivalent/Poised TSS	Primary T cells from cord blood	blood
9	chr8:62051400-62052200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
10	chr8:62051400-62052200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr8:62051400-62052200	Active TSS	Brain Hippocampus Middle	brain
12	chr8:62051400-62052200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
13	chr8:62051400-62052200	Active TSS	Fetal Brain Female	brain
14	chr8:62051400-62052400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:62051400-62052400	Active TSS	H9 Cell Line	embryonic stem cell
16	chr8:62051400-62052400	Flanking Active TSS	Primary B cells from cord blood	blood
17	chr8:62051400-62052400	Flanking Active TSS	Primary hematopoietic stem cells	blood
18	chr8:62051400-62052400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr8:62051400-62052400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
20	chr8:62051400-62052400	Active TSS	Brain Substantia Nigra	brain
21	chr8:62051400-62052400	Active TSS	Fetal Brain Male	brain
22	chr8:62051400-62052600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr8:62051400-62052600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr8:62051400-62052800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr8:62051400-62052800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
26	chr8:62051400-62052800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr8:62051400-62052800	Active TSS	Brain Cingulate Gyrus	brain
28	chr8:62051400-62052800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
29	chr8:62051400-62053000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
30	chr8:62051600-62052000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr8:62051600-62052000	Active TSS	Cortex derived primary cultured neurospheres	brain
32	chr8:62051600-62052000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
33	chr8:62051600-62052000	Flanking Bivalent TSS/Enh	Fetal Lung	lung
34	chr8:62051600-62052000	Active TSS	Psoas Muscle	Psoas
35	chr8:62051600-62052000	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
36	chr8:62051600-62052000	Active TSS	Sigmoid Colon	Sigmoid Colon
37	chr8:62051600-62052000	Bivalent/Poised TSS	Stomach Mucosa	stomach
38	chr8:62051600-62052000	Active TSS	A549	lung
39	chr8:62051600-62052200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr8:62051600-62052200	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr8:62051600-62052200	Flanking Active TSS	Liver	Liver
42	chr8:62051600-62052200	Active TSS	Brain Inferior Temporal Lobe	brain
43	chr8:62051600-62052200	Active TSS	Colonic Mucosa	Colon
44	chr8:62051600-62052200	Active TSS	Colon Smooth Muscle	Colon
45	chr8:62051600-62052200	Active TSS	Ovary	ovary
46	chr8:62051600-62052200	Active TSS	Placenta Amnion	Placenta Amnion
47	chr8:62051600-62052200	Active TSS	Rectal Smooth Muscle	rectum
48	chr8:62051600-62052200	Bivalent/Poised TSS	HepG2	liver
49	chr8:62051600-62052200	Active TSS	NHDF-Ad	bronchial
50	chr8:62051600-62052200	Bivalent/Poised TSS	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links