Variant report

Variant	rs10216609
Chromosome Location	chr8:62034284-62034285
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10093561	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10101715	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10103997	0.84[CEU][hapmap]
rs10110500	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10112331	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10113435	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10113823	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1019903	0.81[EUR][1000 genomes]
rs13439567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28414183	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs3943823	0.82[EUR][1000 genomes]
rs7001997	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7830831	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9298046	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62034000-62034400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr8:62034000-62034400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr8:62034000-62034400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
4	chr8:62034000-62034400	Flanking Active TSS	K562	blood
5	chr8:62034000-62034600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr8:62034000-62034800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr8:62034000-62035000	Enhancers	Fetal Brain Female	brain
8	chr8:62034000-62035200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:62034000-62037000	Enhancers	GM12878-XiMat	blood
10	chr8:62034200-62034400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:62034200-62034400	Enhancers	H9 Cell Line	embryonic stem cell
12	chr8:62034200-62034400	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr8:62034200-62034600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr8:62034200-62034600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr8:62034200-62034800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr8:62034200-62035000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr8:62034200-62035600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links