Variant report

Variant	rs9298046
Chromosome Location	chr8:62007450-62007451
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10093561	0.82[ASN][1000 genomes]
rs10101715	0.82[ASN][1000 genomes]
rs10110500	0.82[ASN][1000 genomes]
rs10112331	0.82[ASN][1000 genomes]
rs10113435	0.82[ASN][1000 genomes]
rs10113823	0.82[ASN][1000 genomes]
rs1019903	0.96[EUR][1000 genomes]
rs10216609	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs3943823	0.97[EUR][1000 genomes]
rs7001997	0.82[ASN][1000 genomes]
rs72654628	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv465697	chr8:61963699-62025948	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv611425	chr8:61963699-62025948	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61998600-62008000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr8:62006400-62007800	Enhancers	GM12878-XiMat	blood
3	chr8:62006400-62008000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr8:62006400-62008200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr8:62006400-62008200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr8:62006400-62008400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr8:62006600-62007800	Weak transcription	Fetal Thymus	thymus
8	chr8:62006600-62008400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr8:62006800-62008200	Weak transcription	Brain Anterior Caudate	brain
10	chr8:62006800-62008800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr8:62007000-62008000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:62007000-62008200	Weak transcription	Brain Germinal Matrix	brain
13	chr8:62007000-62008400	Weak transcription	Brain Substantia Nigra	brain
14	chr8:62007200-62008200	Weak transcription	Brain Hippocampus Middle	brain
15	chr8:62007200-62008400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr8:62007200-62008400	Enhancers	Primary B cells from peripheral blood	blood
17	chr8:62007400-62007800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr8:62007400-62011200	Weak transcription	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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