Variant report

Variant	rs13439613
Chromosome Location	chr8:99210175-99210176
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10103268	0.89[CHB][hapmap];0.90[EUR][1000 genomes]
rs10107699	0.88[CHB][hapmap];0.90[GIH][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16896762	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs2053934	0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2122930	0.88[CHB][hapmap];0.90[GIH][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6468625	0.85[GIH][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs6982456	0.89[CHB][hapmap];0.90[GIH][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7006240	0.87[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7010905	1.00[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7820126	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7841749	0.88[CHB][hapmap];0.81[GIH][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv831405	chr8:99095239-99260934	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99191600-99243800	Weak transcription	Spleen	Spleen
2	chr8:99192200-99210600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr8:99192200-99214400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr8:99192800-99210400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:99194800-99216600	Weak transcription	Colonic Mucosa	Colon
6	chr8:99197000-99210400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr8:99197000-99219000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr8:99197800-99215400	Weak transcription	Fetal Stomach	stomach
9	chr8:99198000-99210400	Weak transcription	Osteobl	bone
10	chr8:99198000-99217000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr8:99198200-99215200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr8:99198200-99239200	Weak transcription	Lung	lung
13	chr8:99201800-99214400	Weak transcription	Left Ventricle	heart
14	chr8:99202000-99215200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr8:99202000-99215200	Weak transcription	NHDF-Ad	bronchial
16	chr8:99203600-99210600	Weak transcription	Adipose Nuclei	Adipose
17	chr8:99203800-99252600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr8:99204000-99214200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr8:99204600-99214800	Weak transcription	Gastric	stomach
20	chr8:99205200-99214400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr8:99205200-99214400	Weak transcription	Fetal Intestine Large	intestine
22	chr8:99205200-99259600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr8:99205400-99214600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr8:99205600-99214600	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr8:99205600-99220000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr8:99206400-99216600	Weak transcription	Aorta	Aorta
27	chr8:99206600-99213200	Weak transcription	Ovary	ovary
28	chr8:99206600-99224400	Weak transcription	Fetal Intestine Small	intestine
29	chr8:99206600-99239800	Weak transcription	Pancreas	Pancrea
30	chr8:99208000-99227600	Weak transcription	Esophagus	oesophagus
31	chr8:99209400-99217600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr8:99210000-99210800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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