Variant report

Variant	rs6982456
Chromosome Location	chr8:99236601-99236602
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:99233406..99236750-chr8:99304645..99308471,3	MCF-7	breast:
2	chr8:99229509..99232339-chr8:99235688..99237647,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104361	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10103268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10107699	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13439613	0.89[CHB][hapmap];0.90[GIH][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16896762	0.88[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2053934	0.95[CEU][hapmap];0.88[CHB][hapmap];0.81[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2122930	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6468625	0.91[CEU][hapmap];0.82[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.86[MEX][hapmap];0.96[MKK][hapmap];0.97[TSI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6982810	0.92[YRI][hapmap]
rs7006240	0.93[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7010905	0.95[CEU][hapmap];0.88[CHB][hapmap];0.81[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7820126	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7841749	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.93[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv831405	chr8:99095239-99260934	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv6326	chr8:99221674-99263687	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99191600-99243800	Weak transcription	Spleen	Spleen
2	chr8:99198200-99239200	Weak transcription	Lung	lung
3	chr8:99203800-99252600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr8:99205200-99259600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr8:99206600-99239800	Weak transcription	Pancreas	Pancrea
6	chr8:99211200-99243200	Weak transcription	Fetal Lung	lung
7	chr8:99213200-99239800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr8:99216600-99245400	Weak transcription	Stomach Mucosa	stomach
9	chr8:99217400-99238800	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr8:99217800-99238600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr8:99218400-99259000	Weak transcription	Primary B cells from peripheral blood	blood
12	chr8:99225200-99239800	Weak transcription	Gastric	stomach
13	chr8:99226000-99248400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr8:99226200-99246400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:99226200-99248400	Weak transcription	HSMMtube	muscle
16	chr8:99226200-99267000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr8:99226400-99245800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr8:99226400-99246200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr8:99226400-99246200	Weak transcription	Osteobl	bone
20	chr8:99228800-99239000	Weak transcription	Ovary	ovary
21	chr8:99229400-99239200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr8:99229400-99239400	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr8:99229400-99267000	Weak transcription	Left Ventricle	heart
24	chr8:99229600-99238800	Weak transcription	Aorta	Aorta
25	chr8:99229600-99241600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr8:99231000-99241200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr8:99231600-99238800	Weak transcription	Fetal Stomach	stomach
28	chr8:99231800-99238800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr8:99231800-99238800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr8:99233000-99245800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr8:99233400-99239200	Weak transcription	Esophagus	oesophagus
32	chr8:99235200-99237800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr8:99235200-99238400	Weak transcription	Fetal Intestine Large	intestine
34	chr8:99235400-99238400	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr8:99235400-99246000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr8:99235400-99268400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr8:99235800-99241400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr8:99236000-99239400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr8:99236000-99248400	Weak transcription	HMEC	breast
40	chr8:99236400-99236800	Enhancers	Adipose Nuclei	Adipose

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