Variant report
| Variant | rs1346015 |
|---|---|
| Chromosome Location | chr8:120284514-120284515 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:120278648..120281614-chr8:120282840..120285748,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs1364704 | 0.82[CHB][hapmap] |
| rs1364713 | 0.82[CHB][hapmap] |
| rs1381339 | 0.93[ASN][1000 genomes] |
| rs1425049 | 0.85[CHB][hapmap] |
| rs1425061 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1579353 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs1582675 | 0.93[AFR][1000 genomes] |
| rs2432970 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2432971 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2432976 | 0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2447185 | 0.95[ASN][1000 genomes] |
| rs2468192 | 0.85[CHB][hapmap] |
| rs2469989 | 0.91[AMR][1000 genomes] |
| rs2469992 | 0.91[ASN][1000 genomes] |
| rs2469993 | 0.91[AMR][1000 genomes] |
| rs2470041 | 0.82[CHB][hapmap];0.90[JPT][hapmap] |
| rs2470042 | 1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs3739419 | 0.82[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv868916 | chr8:119911943-120762250 | Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| 2 | nsv1026655 | chr8:120282929-120522329 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:120282800-120285000 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
