Variant report
| Variant | rs1582675 |
|---|---|
| Chromosome Location | chr8:120289660-120289661 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:120288326..120291093-chr8:120293809..120295588,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs1346015 | 0.93[AFR][1000 genomes] |
| rs1425048 | 0.88[AMR][1000 genomes] |
| rs1425068 | 0.81[EUR][1000 genomes] |
| rs1579353 | 1.00[ASN][1000 genomes] |
| rs1895706 | 0.83[AMR][1000 genomes] |
| rs2432969 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2432970 | 1.00[ASN][1000 genomes] |
| rs2432971 | 1.00[ASN][1000 genomes] |
| rs2432976 | 1.00[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2432978 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2432984 | 0.83[AMR][1000 genomes] |
| rs2432985 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2468164 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2469989 | 0.95[ASN][1000 genomes] |
| rs2469993 | 0.95[ASN][1000 genomes] |
| rs2470041 | 0.81[EUR][1000 genomes] |
| rs2470042 | 0.81[EUR][1000 genomes] |
| rs2875872 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs764292 | 0.88[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv868916 | chr8:119911943-120762250 | Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| 2 | nsv1026655 | chr8:120282929-120522329 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:120289600-120291000 | ZNF genes & repeats | Liver | Liver |
