Variant report

Variant	rs1346023
Chromosome Location	chr7:136276387-136276388
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10224281	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10271343	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277653	0.81[AMR][1000 genomes]
rs1030338	0.88[ASN][1000 genomes]
rs10480518	0.81[AFR][1000 genomes]
rs12532126	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1364745	0.94[ASN][1000 genomes]
rs1986749	0.82[AMR][1000 genomes]
rs1989509	0.89[AMR][1000 genomes]
rs4728401	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4732224	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73457625	0.87[AMR][1000 genomes]
rs880420	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9692068	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518439	chr7:136134265-136452082	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136264000-136276400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:136275400-136276600	Enhancers	Colon Smooth Muscle	Colon
3	chr7:136275800-136276600	Enhancers	Rectal Smooth Muscle	rectum
4	chr7:136276200-136276400	Enhancers	Fetal Stomach	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links