Variant report

Variant	rs1986749
Chromosome Location	chr7:136321655-136321656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10224281	0.81[AMR][1000 genomes]
rs10244704	0.83[AFR][1000 genomes]
rs10256896	0.82[AFR][1000 genomes]
rs10271343	0.81[AMR][1000 genomes]
rs10277653	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1346023	0.82[AMR][1000 genomes]
rs1962415	0.83[AFR][1000 genomes]
rs1989509	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73457625	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518439	chr7:136134265-136452082	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136319600-136323400	Enhancers	Fetal Brain Male	brain
2	chr7:136320600-136322400	Enhancers	Fetal Brain Female	brain
3	chr7:136321200-136321800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:136321200-136322600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr7:136321200-136323000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:136321400-136322400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:136321400-136323000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:136321600-136322400	Enhancers	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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